Three ways around this.
1) Split your changes into 2 or more. So bring you number of changes under 99,999 limit.
2) Archive and/or delete the current version of the Element and start with version 1.(so VVLL=0100) This would require that you ensure that the Element is archived and/or deleted up the map also.
3) Change the TYPE definition DELTA FORMAT to Full image or LOG. These delta formats do not log changes. This would require that the elements for the type be deleted and reloaded or a new type be created with the new DELTA FORMAT. This must be also done up the map.