Footprint compromised errors can be displayed during source management of an element action. These errors can appear on either base or delta files members. This can happen if the base, delta, or master control files have been restored or copied. The message text is: C1G0119E FOOTPRINT COMPROMISED and it notes the base or delta file. If other files are noted, that is a different problem.
If the file is a base or delta file, try deleting the element in batch. You will still get errors, but the element will be deleted.
If that does not resolve the problem, the base, delta and master control file need to be synchronized. If any one of these files is out of sync with the other files, you can get this error. Running the Unload, Reload, Validate utility (iprfx.iqual.CSIQJCL(BC1JVALD)) in validate will identify the problematic elements. The job is documented in the CA Endevor Utilities Guide. This will not resolve the problem, but it will provide diagnostic information. The solution will depend on the cause and extent of the problem.